SNP Profiles of ICS 70 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	CT	CT	AC	CT	GT	CT	CT	AT	AG	CT	AG
1._RUQ_321	_	_	CG	_	_	_	_	GT	_	CT	_	AG	_	AG
2._RUQ_321	_	AA	CG	CT	_	_	_	GT	_	_	_	_	CT	AG
3._ICS_70	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AG
4._ICS_70	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AG
5._GC-04-028-2-10	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AG
6._GC-04-028-2-10	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AG
7._ICS_70	CT	AA	GG	CT	TT	AA	CC	GT	CC	TT	AA	AA	CT	GG
8._RUQ_321	AG	AA	CG	AG	AG	AC	AG	AC	_	_	AT	AG	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AT	CG	CT	CT	CC	GG	GG	TT	CC	CG	GT	CT	AC
1._RUQ_321	_	_	_	_	_	CC	GG	GG	_	CC	CG	_	_	AC
2._RUQ_321	_	_	_	_	CT	CC	GG	_	TT	CC	CG	GT	CT	AC
3._ICS_70	CT	AT	CG	CT	CT	CC	GG	AA	TT	CC	CG	GT	CT	AC
4._ICS_70	CT	AT	CG	CT	CT	CC	GG	AA	TT	CC	CG	GT	CT	AC
5._GC-04-028-2-10	CT	AT	CG	CT	CT	CC	GG	AA	TT	CC	CG	GT	CT	AC
6._GC-04-028-2-10	CT	AT	CG	CT	CT	CC	GG	AA	TT	CC	CG	GT	CT	AC
7._ICS_70	CT	AA	GG	TT	CC	CG	GT	AG	TT	CC	CC	TT	TT	CC
8._RUQ_321	AG	AT	CG	AG	AG	GG	CC	_	AA	CC	CG	AC	_	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	AG	AA	CT	AG	CG	AC	CT	GT	AA	AA	CG	X_X	X_X
1._RUQ_321	_	_	_	_	AG	_	_	_	_	AA	_	_	X_X	X_X
2._RUQ_321	AG	_	AA	CT	AG	CG	AC	CT	GT	AA	_	_	X_X	X_X
3._ICS_70	AG	GG	AA	CT	AG	CG	AC	CT	GT	AA	AA	CG	X_X	X_X
4._ICS_70	AG	GG	AA	CT	AG	CG	AC	CT	GT	AA	AA	CG	X_X	X_X
5._GC-04-028-2-10	AG	GG	AA	CT	AG	CG	AC	CT	GT	AA	AA	CG	X_X	X_X
6._GC-04-028-2-10	AG	GG	AA	CT	AG	CG	AC	CT	GT	AA	AA	CG	X_X	X_X
7._ICS_70	AG	GG	TT	CC	AA	_	AC	CC	GT	AC	TT	GG	X_X	X_X
8._RUQ_321	_	GG	AA	AG	AG	CG	AC	AG	AC	AA	AA	CG	X_X	X_X

Input profile: ICS_70 RUQ_321

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._ICS_70 RUQ_321

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._ICS_70 RUQ_321

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._ICS_70

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4210 7 > FP

Dapeng Zhang, 2016

4._ICS_70

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4210 1 > FP

Dapeng Zhang, 2016

Population Assignment:

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Dapeng Zhang, 2016

5._ICS_70 GC-04-028-2-10

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

6._ICS_70 GC-04-028-2-10

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP2

Mars, 2018

7._ICS_70

60.3 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block5

Dapeng Zhang, 2016

8._ICS_70 RUQ_321

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25

SNP Profiles of ICS 70 View Data

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Input profile: ICS_70 RUQ_321

1._ICS_70 RUQ_321

identical 13 shared markers

2._ICS_70 RUQ_321

97.9 % 24 shared markers

3._ICS_70

93.8 % 40 shared markers

4._ICS_70

93.8 % 40 shared markers

5._ICS_70 GC-04-028-2-10

93.8 % 40 shared markers

6._ICS_70 GC-04-028-2-10

93.8 % 40 shared markers

7._ICS_70

60.3 % 39 shared markers

8._ICS_70 RUQ_321

51.4 % 35 shared markers

identical
13 shared markers

97.9 %
24 shared markers

93.8 %
40 shared markers

93.8 %
40 shared markers

93.8 %
40 shared markers

93.8 %
40 shared markers

60.3 %
39 shared markers

51.4 %
35 shared markers